Help: GMI Outbreak Detector Outputs

Inputs Outputs Method

This workflow generates a four output files:

  • A RESULTS.tar.gz file that can be downloaded in the 'View results' section > 'Download all the raw data in a compressed tar.gz file'. It contains a 'summary' Manifest.json file and all the assessment data required to perform the benchmark, together with several SVG files with the visualization of the results and applied classification methods.
  • A JSON file that contains the assessment metrics and metadata ready to be pushed into the official OpenEBench Benchmarking Registry.
  • A nfstats.tar.gz file that can also be downloaded from the workspace and contains Nextflow logging information about the run: reports about execution time, memory usage...
  • other_files.tar.gz contains supplementary files used or produced by the workflow such as the HeatMap visualization of the benchmark results or the Robinson-Foulds matrix.

Also, it is possible to visualize all the benchmarking results directly in the VRE User Workspace by clicking in the 'View results' icon in the right of the execution folder (e.g run001).