Help: TCGA Cancer Driver Inputs

Inputs Outputs References Method



Input parameters

The workflow requires three input parameters:

  • A single input file that contains a the of gene indentifiers to be evaluated against the correpondent metrics reference datasets (one gene per line together with some additional information e.g. transcript id, p-value...)
    When uploading your list, make sure that you define the following File Type and Data Type for this file, to make sure that VRE understand the type of data your are importing:
FORMAT TYPE         DATA TYPE
TXT                 Data to Evaluate

At Get Data -> Import Sample Data you'll be able to donwload a test sample file for this workflow.

  • A list of cancer types where user wants to benchmark the gene predictions. It is possible to select one or more cancer types from a drop-down list.
  • The name of the tool used to predict the cancer driver genes.