Help: TCGA Cancer Driver Inputs
The workflow requires three input parameters:
- A single input file that contains a the of gene indentifiers to be evaluated against the correpondent metrics reference datasets (one gene per line together with some additional information e.g. transcript id, p-value...)
When uploading your list, make sure that you define the following File Type and Data Type for this file, to make sure that VRE understand the type of data your are importing:
FORMAT TYPE DATA TYPE TXT Data to Evaluate
At Get Data -> Import Sample Data you'll be able to donwload a test sample file for this workflow.
- A list of cancer types where user wants to benchmark the gene predictions. It is possible to select one or more cancer types from a drop-down list.
- The name of the tool used to predict the cancer driver genes.