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GMI Disease outbreak detection benchmarking

Service to measure the performance of the GMI outbreak detection system using a phylogenomic pipeline.

TransBioNet WG1 - 2020 CNV detection benchmark

TransBioNet's working group #1 (WG1) focuses in Standards and Benchmarking of different relevant aspects for translational bioinformatics. In this context, there is a concerted effort on benchmarking structural variants, especially, on copy number variations (CNVs)

Alternative Polyadenilation Evaluation - 2021 Benchmarking Event Quantification

Evaluation of alternative polyadenilation prediction methods. 2021 Benchmarking event

Critical Assessment of Intrinsic protein Disorder. First Edition.

Determine the state of the art in predicting intrinsically disordered regions in proteins and the subset of disordered residues involved in binding other molecules.

Quest for Orthologs - 2018 Benchmarking Event 6

Quest for Orthologs Consortium - Challenge 6. Evaluation of ortholgy prediction methods

Quest for Orthologs - 2020 Benchmarking Event

Quest for Orthologs Consortium - 2020 Benchmark. Evaluation of ortholgy prediction methods

Quest for Orthologs - 2020 Benchmarking Event

Quest for Orthologs Consortium - 2020 Benchmark. Evaluation of ortholgy prediction methods

Quest for Orthologs - 2022 Benchmarking Event

Quest for Orthologs Consortium - 2022 Benchmark. Evaluation of ortholgy prediction methods

TCGA Cancer Driver Genes Benchmarking

Service to measure cancer drive genes predicted by individual tools and/or workflows. This is based on the efforts made by the TCGA working group

LRGASP Challenge 1: Isoform Quantification

Identify which sequencing platform, library prep, and computational tool(s) combination give the highest sensitivity and precision for transcript detection.

LRGASP Challenge 1 Human: Isoform Quantification

Identify which sequencing platform, library prep, and computational tool(s) combination give the highest sensitivity and precision for transcript detection.

LRGASP Challenge 3 de-novo transcript isoform identification: Mouse ES cell line

Long-read RNA-seq Genome Annotation Assessment Project challenge for Mouse ES cell line

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